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Tripal 0.3b
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Tripal 0.3b
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Provides an application programming interface (API) for describing Chado tables. This API consists of a set of functions, one for each table in Chado. Each function simply returns a Drupal style array that defines the table.
Because Drupal 6 does not handle foreign key relationships, a separate hook is used to define the foreign key relationships for each table. As of version 0.3b of Tripal, not all foreign key relationships have been defined. Therefore, if you need a foreign key you must create the appropriate hook. Hooks are named hook_chado_table_schema() where 'hook' is replaced with the module name, and 'table' is replaced by the Chado table name.
The functions provided in this documentation should not be called as is, but if you need the Drupal-style array definition for any table, use the following function call:
$table_desc = module_invoke_all('chado_'.$table.'_schema');
where the variable $table contains the name of the table you want to retireve. The function call above uses the Drupal hook infrastructure to call the appropriate function in the Schema API as well as the appropriate hook to add in any foreign key relationships.
| tripal_analysis_chado_analysis_schema | ( | ) |
Implements hook_chado_analysis_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 21 of file tripal_analysis.api.inc.
| tripal_core_chado_acquisition_relationship_schema | ( | ) |
Implements hook_acquisition_relationship_schema() Purpose: To describe the structure of acquisition_relationship to tripal
Definition at line 8049 of file tripal_core.schema.api.inc.
| tripal_core_chado_acquisition_schema | ( | ) |
Implements hook_acquisition_schema() Purpose: To describe the structure of acquisition to tripal
Definition at line 8130 of file tripal_core.schema.api.inc.
| tripal_core_chado_acquisitionprop_schema | ( | ) |
Implements hook_acquisitionprop_schema() Purpose: To describe the structure of acquisitionprop to tripal
Definition at line 8213 of file tripal_core.schema.api.inc.
| tripal_core_chado_all_feature_names_schema | ( | ) |
Implements hook_all_feature_names_schema() Purpose: To describe the structure of all_feature_names to tripal
Definition at line 8285 of file tripal_core.schema.api.inc.
| tripal_core_chado_analysis_schema | ( | ) |
Implements hook_analysis_schema() Purpose: To describe the structure of analysis to tripal
Definition at line 8335 of file tripal_core.schema.api.inc.
| tripal_core_chado_analysisfeature_schema | ( | ) |
Implements hook_analysisfeature_schema() Purpose: To describe the structure of analysisfeature to tripal
Definition at line 8432 of file tripal_core.schema.api.inc.
| tripal_core_chado_analysisfeatureprop_schema | ( | ) |
Implements hook_analysisfeatureprop_schema() Purpose: To describe the structure of analysisfeatureprop to tripal
Definition at line 8516 of file tripal_core.schema.api.inc.
| tripal_core_chado_analysisprop_schema | ( | ) |
Implements hook_analysisprop_schema() Purpose: To describe the structure of analysisprop to tripal
Definition at line 8995 of file tripal_core.schema.api.inc.
| tripal_core_chado_arraydesign_schema | ( | ) |
Implements hook_arraydesign_schema() Purpose: To describe the structure of arraydesign to tripal
Definition at line 9067 of file tripal_core.schema.api.inc.
| tripal_core_chado_arraydesignprop_schema | ( | ) |
Implements hook_arraydesignprop_schema() Purpose: To describe the structure of arraydesignprop to tripal
Definition at line 9210 of file tripal_core.schema.api.inc.
| tripal_core_chado_assay_biomaterial_schema | ( | ) |
Implements hook_assay_biomaterial_schema() Purpose: To describe the structure of assay_biomaterial to tripal
Definition at line 8919 of file tripal_core.schema.api.inc.
| tripal_core_chado_assay_project_schema | ( | ) |
Implements hook_assay_project_schema() Purpose: To describe the structure of assay_project to tripal
Definition at line 8859 of file tripal_core.schema.api.inc.
| tripal_core_chado_assay_schema | ( | ) |
Implements hook_assay_schema() Purpose: To describe the structure of assay to tripal
Definition at line 9282 of file tripal_core.schema.api.inc.
| tripal_core_chado_assayprop_schema | ( | ) |
Implements hook_assayprop_schema() Purpose: To describe the structure of assayprop to tripal
Definition at line 8581 of file tripal_core.schema.api.inc.
| tripal_core_chado_biomaterial_dbxref_schema | ( | ) |
Implements hook_biomaterial_dbxref_schema() Purpose: To describe the structure of biomaterial_dbxref to tripal
Definition at line 8730 of file tripal_core.schema.api.inc.
| tripal_core_chado_biomaterial_relationship_schema | ( | ) |
Implements hook_biomaterial_relationship_schema() Purpose: To describe the structure of biomaterial_relationship to tripal
Definition at line 8790 of file tripal_core.schema.api.inc.
| tripal_core_chado_biomaterial_schema | ( | ) |
Implements hook_biomaterial_schema() Purpose: To describe the structure of biomaterial to tripal
Definition at line 8653 of file tripal_core.schema.api.inc.
| tripal_core_chado_biomaterial_treatment_schema | ( | ) |
Implements hook_biomaterial_treatment_schema() Purpose: To describe the structure of biomaterial_treatment to tripal
Definition at line 7970 of file tripal_core.schema.api.inc.
| tripal_core_chado_biomaterialprop_schema | ( | ) |
Implements hook_biomaterialprop_schema() Purpose: To describe the structure of biomaterialprop to tripal
Definition at line 7898 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_cvterm_schema | ( | ) |
Implements hook_cell_line_cvterm_schema() Purpose: To describe the structure of cell_line_cvterm to tripal
Definition at line 7001 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_cvtermprop_schema | ( | ) |
Implements hook_cell_line_cvtermprop_schema() Purpose: To describe the structure of cell_line_cvtermprop to tripal
Definition at line 7068 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_dbxref_schema | ( | ) |
Implements hook_cell_line_dbxref_schema() Purpose: To describe the structure of cell_line_dbxref to tripal
Definition at line 7134 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_feature_schema | ( | ) |
Implements hook_cell_line_feature_schema() Purpose: To describe the structure of cell_line_feature to tripal
Definition at line 6868 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_library_schema | ( | ) |
Implements hook_cell_line_library_schema() Purpose: To describe the structure of cell_line_library to tripal
Definition at line 6808 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_pub_schema | ( | ) |
Implements hook_cell_line_pub_schema() Purpose: To describe the structure of cell_line_pub to tripal
Definition at line 6562 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_relationship_schema | ( | ) |
Implements hook_cell_line_relationship_schema() Purpose: To describe the structure of cell_line_relationship to tripal
Definition at line 6502 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_schema | ( | ) |
Implements hook_cell_line_schema() Purpose: To describe the structure of cell_line to tripal
Definition at line 6928 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_line_synonym_schema | ( | ) |
Implements hook_cell_line_synonym_schema() Purpose: To describe the structure of cell_line_synonym to tripal
Definition at line 6616 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_lineprop_pub_schema | ( | ) |
Implements hook_cell_lineprop_pub_schema() Purpose: To describe the structure of cell_lineprop_pub to tripal
Definition at line 6754 of file tripal_core.schema.api.inc.
| tripal_core_chado_cell_lineprop_schema | ( | ) |
Implements hook_cell_lineprop_schema() Purpose: To describe the structure of cell_lineprop to tripal
Definition at line 6688 of file tripal_core.schema.api.inc.
| tripal_core_chado_channel_schema | ( | ) |
Implements hook_channel_schema() Purpose: To describe the structure of channel to tripal
Definition at line 7194 of file tripal_core.schema.api.inc.
| tripal_core_chado_common_ancestor_cvterm_schema | ( | ) |
Implements hook_common_ancestor_cvterm_schema() Purpose: To describe the structure of common_ancestor_cvterm to tripal
Definition at line 7247 of file tripal_core.schema.api.inc.
| tripal_core_chado_common_descendant_cvterm_schema | ( | ) |
Implements hook_common_descendant_cvterm_schema() Purpose: To describe the structure of common_descendant_cvterm to tripal
Definition at line 7617 of file tripal_core.schema.api.inc.
| tripal_core_chado_contact_relationship_schema | ( | ) |
Implements hook_contact_relationship_schema() Purpose: To describe the structure of contact_relationship to tripal
Definition at line 7741 of file tripal_core.schema.api.inc.
| tripal_core_chado_contact_schema | ( | ) |
Implements hook_contact_schema() Purpose: To describe the structure of contact to tripal
Definition at line 7681 of file tripal_core.schema.api.inc.
| tripal_core_chado_control_schema | ( | ) |
Implements hook_control_schema() Purpose: To describe the structure of control to tripal
Definition at line 7810 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_cvterm_count_schema | ( | ) |
Implements hook_cv_cvterm_count_schema() Purpose: To describe the structure of cv_cvterm_count to tripal
Definition at line 7517 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_cvterm_count_with_obs_schema | ( | ) |
Implements hook_cv_cvterm_count_with_obs_schema() Purpose: To describe the structure of cv_cvterm_count_with_obs to tripal
Definition at line 7311 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_leaf_schema | ( | ) |
Implements hook_cv_leaf_schema() Purpose: To describe the structure of cv_leaf to tripal
Definition at line 7357 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_link_count_schema | ( | ) |
Implements hook_cv_link_count_schema() Purpose: To describe the structure of cv_link_count to tripal
Definition at line 7401 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_path_count_schema | ( | ) |
Implements hook_cv_path_count_schema() Purpose: To describe the structure of cv_path_count to tripal
Definition at line 7459 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_root_schema | ( | ) |
Implements hook_cv_root_schema() Purpose: To describe the structure of cv_root to tripal
Definition at line 9383 of file tripal_core.schema.api.inc.
| tripal_core_chado_cv_schema | ( | ) |
Implements hook_cv_schema() Purpose: To describe the structure of cv to tripal
Definition at line 7563 of file tripal_core.schema.api.inc.
| tripal_core_chado_cvterm_dbxref_schema | ( | ) |
Implements hook_cvterm_dbxref_schema() Purpose: To describe the structure of cvterm_dbxref to tripal
Definition at line 11634 of file tripal_core.schema.api.inc.
| tripal_core_chado_cvterm_relationship_schema | ( | ) |
Implements hook_cvterm_relationship_schema() Purpose: To describe the structure of cvterm_relationship to tripal
Definition at line 11700 of file tripal_core.schema.api.inc.
| tripal_core_chado_cvterm_schema | ( | ) |
Implements hook_cvterm_schema() Purpose: To describe the structure of cvterm to tripal
Definition at line 9427 of file tripal_core.schema.api.inc.
| tripal_core_chado_cvtermpath_schema | ( | ) |
Implements hook_cvtermpath_schema() Purpose: To describe the structure of cvtermpath to tripal
Definition at line 11769 of file tripal_core.schema.api.inc.
| tripal_core_chado_cvtermprop_schema | ( | ) |
Implements hook_cvtermprop_schema() Purpose: To describe the structure of cvtermprop to tripal
Definition at line 11852 of file tripal_core.schema.api.inc.
| tripal_core_chado_cvtermsynonym_schema | ( | ) |
Implements hook_cvtermsynonym_schema() Purpose: To describe the structure of cvtermsynonym to tripal
Definition at line 11571 of file tripal_core.schema.api.inc.
| tripal_core_chado_db_dbxref_count_schema | ( | ) |
Implements hook_db_dbxref_count_schema() Purpose: To describe the structure of db_dbxref_count to tripal
Definition at line 11213 of file tripal_core.schema.api.inc.
| tripal_core_chado_db_schema | ( | ) |
Implements hook_db_schema() Purpose: To describe the structure of db to tripal
Definition at line 11504 of file tripal_core.schema.api.inc.
| tripal_core_chado_dbxref_schema | ( | ) |
Implements hook_dbxref_schema() Purpose: To describe the structure of dbxref to tripal
Definition at line 11259 of file tripal_core.schema.api.inc.
| tripal_core_chado_dbxrefprop_schema | ( | ) |
Implements hook_dbxrefprop_schema() Purpose: To describe the structure of dbxrefprop to tripal
Definition at line 11336 of file tripal_core.schema.api.inc.
| tripal_core_chado_dfeatureloc_schema | ( | ) |
Implements hook_dfeatureloc_schema() Purpose: To describe the structure of dfeatureloc to tripal
Definition at line 11409 of file tripal_core.schema.api.inc.
| tripal_core_chado_eimage_schema | ( | ) |
Implements hook_eimage_schema() Purpose: To describe the structure of eimage to tripal
Definition at line 11926 of file tripal_core.schema.api.inc.
| tripal_core_chado_element_relationship_schema | ( | ) |
Implements hook_element_relationship_schema() Purpose: To describe the structure of element_relationship to tripal
Definition at line 12445 of file tripal_core.schema.api.inc.
| tripal_core_chado_element_schema | ( | ) |
Implements hook_element_schema() Purpose: To describe the structure of element to tripal
Definition at line 11983 of file tripal_core.schema.api.inc.
| tripal_core_chado_elementresult_relationship_schema | ( | ) |
Implements hook_elementresult_relationship_schema() Purpose: To describe the structure of elementresult_relationship to tripal
Definition at line 12598 of file tripal_core.schema.api.inc.
| tripal_core_chado_elementresult_schema | ( | ) |
Implements hook_elementresult_schema() Purpose: To describe the structure of elementresult to tripal
Definition at line 12529 of file tripal_core.schema.api.inc.
| tripal_core_chado_environment_cvterm_schema | ( | ) |
Implements hook_environment_cvterm_schema() Purpose: To describe the structure of environment_cvterm to tripal
Definition at line 12385 of file tripal_core.schema.api.inc.
| tripal_core_chado_environment_schema | ( | ) |
Implements hook_environment_schema() Purpose: To describe the structure of environment to tripal
Definition at line 12682 of file tripal_core.schema.api.inc.
| tripal_core_chado_expression_cvterm_schema | ( | ) |
Implements hook_expression_cvterm_schema() Purpose: To describe the structure of expression_cvterm to tripal
Definition at line 12059 of file tripal_core.schema.api.inc.
| tripal_core_chado_expression_cvtermprop_schema | ( | ) |
Implements hook_expression_cvtermprop_schema() Purpose: To describe the structure of expression_cvtermprop to tripal
Definition at line 12134 of file tripal_core.schema.api.inc.
| tripal_core_chado_expression_image_schema | ( | ) |
Implements hook_expression_image_schema() Purpose: To describe the structure of expression_image to tripal
Definition at line 12206 of file tripal_core.schema.api.inc.
| tripal_core_chado_expression_pub_schema | ( | ) |
Implements hook_expression_pub_schema() Purpose: To describe the structure of expression_pub to tripal
Definition at line 12266 of file tripal_core.schema.api.inc.
| tripal_core_chado_expression_schema | ( | ) |
Implements hook_expression_schema() Purpose: To describe the structure of expression to tripal
Definition at line 12326 of file tripal_core.schema.api.inc.
| tripal_core_chado_expressionprop_schema | ( | ) |
Implements hook_expressionprop_schema() Purpose: To describe the structure of expressionprop to tripal
Definition at line 11141 of file tripal_core.schema.api.inc.
| tripal_core_chado_f_loc_schema | ( | ) |
Implements hook_f_loc_schema() Purpose: To describe the structure of f_loc to tripal
Definition at line 11075 of file tripal_core.schema.api.inc.
| tripal_core_chado_f_type_schema | ( | ) |
Implements hook_f_type_schema() Purpose: To describe the structure of f_type to tripal
Definition at line 9950 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_contains_schema | ( | ) |
Implements hook_feature_contains_schema() Purpose: To describe the structure of feature_contains to tripal
Definition at line 10163 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_cvterm_dbxref_schema | ( | ) |
Implements hook_feature_cvterm_dbxref_schema() Purpose: To describe the structure of feature_cvterm_dbxref to tripal
Definition at line 9890 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_cvterm_pub_schema | ( | ) |
Implements hook_feature_cvterm_pub_schema() Purpose: To describe the structure of feature_cvterm_pub to tripal
Definition at line 9830 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_cvterm_schema | ( | ) |
Implements hook_feature_cvterm_schema() Purpose: To describe the structure of feature_cvterm to tripal
Definition at line 10207 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_cvtermprop_schema | ( | ) |
Implements hook_feature_cvtermprop_schema() Purpose: To describe the structure of feature_cvtermprop to tripal
Definition at line 9583 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_dbxref_schema | ( | ) |
Implements hook_feature_dbxref_schema() Purpose: To describe the structure of feature_dbxref to tripal
Definition at line 9517 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_difference_schema | ( | ) |
Implements hook_feature_difference_schema() Purpose: To describe the structure of feature_difference to tripal
Definition at line 9655 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_disjoint_schema | ( | ) |
Implements hook_feature_disjoint_schema() Purpose: To describe the structure of feature_disjoint to tripal
Definition at line 9720 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_distance_schema | ( | ) |
Implements hook_feature_distance_schema() Purpose: To describe the structure of feature_distance to tripal
Definition at line 9764 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_expression_schema | ( | ) |
Implements hook_feature_expression_schema() Purpose: To describe the structure of feature_expression to tripal
Definition at line 10289 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_expressionprop_schema | ( | ) |
Implements hook_feature_expressionprop_schema() Purpose: To describe the structure of feature_expressionprop to tripal
Definition at line 10358 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_genotype_schema | ( | ) |
Implements hook_feature_genotype_schema() Purpose: To describe the structure of feature_genotype to tripal
Definition at line 10832 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_intersection_schema | ( | ) |
Implements hook_feature_intersection_schema() Purpose: To describe the structure of feature_intersection to tripal
Definition at line 10916 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_meets_on_same_strand_schema | ( | ) |
Implements hook_feature_meets_on_same_strand_schema() Purpose: To describe the structure of feature_meets_on_same_strand to tripal
Definition at line 11031 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_meets_schema | ( | ) |
Implements hook_feature_meets_schema() Purpose: To describe the structure of feature_meets to tripal
Definition at line 10987 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_phenotype_schema | ( | ) |
Implements hook_feature_phenotype_schema() Purpose: To describe the structure of feature_phenotype to tripal
Definition at line 10772 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_pub_schema | ( | ) |
Implements hook_feature_pub_schema() Purpose: To describe the structure of feature_pub to tripal
Definition at line 10712 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_pubprop_schema | ( | ) |
Implements hook_feature_pubprop_schema() Purpose: To describe the structure of feature_pubprop to tripal
Definition at line 10430 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_relationship_pub_schema | ( | ) |
Implements hook_feature_relationship_pub_schema() Purpose: To describe the structure of feature_relationship_pub to tripal
Definition at line 10580 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_relationship_schema | ( | ) |
Implements hook_feature_relationship_schema() Purpose: To describe the structure of feature_relationship to tripal
Definition at line 10499 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_relationshipprop_pub_schema | ( | ) |
Implements hook_feature_relationshipprop_pub_schema() Purpose: To describe the structure of feature_relationshipprop_pub to tripal
Definition at line 6442 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_relationshipprop_schema | ( | ) |
Implements hook_feature_relationshipprop_schema() Purpose: To describe the structure of feature_relationshipprop to tripal
Definition at line 10640 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_schema | ( | ) |
Implements hook_feature_schema() Purpose: To describe the structure of feature to tripal
Definition at line 10037 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_synonym_schema | ( | ) |
Implements hook_feature_synonym_schema() Purpose: To describe the structure of feature_synonym to tripal
Definition at line 6361 of file tripal_core.schema.api.inc.
| tripal_core_chado_feature_union_schema | ( | ) |
Implements hook_feature_union_schema() Purpose: To describe the structure of feature_union to tripal
Definition at line 2271 of file tripal_core.schema.api.inc.
| tripal_core_chado_featureloc_pub_schema | ( | ) |
Implements hook_featureloc_pub_schema() Purpose: To describe the structure of featureloc_pub to tripal
Definition at line 2465 of file tripal_core.schema.api.inc.
| tripal_core_chado_featureloc_schema | ( | ) |
Implements hook_featureloc_schema() Purpose: To describe the structure of featureloc to tripal
Definition at line 2342 of file tripal_core.schema.api.inc.
| tripal_core_chado_featuremap_pub_schema | ( | ) |
Implements hook_featuremap_pub_schema() Purpose: To describe the structure of featuremap_pub to tripal
Definition at line 2215 of file tripal_core.schema.api.inc.
| tripal_core_chado_featuremap_schema | ( | ) |
Implements hook_featuremap_schema() Purpose: To describe the structure of featuremap to tripal
Definition at line 2525 of file tripal_core.schema.api.inc.
| tripal_core_chado_featurepos_schema | ( | ) |
Implements hook_featurepos_schema() Purpose: To describe the structure of featurepos to tripal
Definition at line 2145 of file tripal_core.schema.api.inc.
| tripal_core_chado_featureprop_pub_schema | ( | ) |
Implements hook_featureprop_pub_schema() Purpose: To describe the structure of featureprop_pub to tripal
Definition at line 1788 of file tripal_core.schema.api.inc.
| tripal_core_chado_featureprop_schema | ( | ) |
Implements hook_featureprop_schema() Purpose: To describe the structure of featureprop to tripal
Definition at line 1848 of file tripal_core.schema.api.inc.
| tripal_core_chado_featurerange_schema | ( | ) |
Implements hook_featurerange_schema() Purpose: To describe the structure of featurerange to tripal
Definition at line 1920 of file tripal_core.schema.api.inc.
| tripal_core_chado_featureset_meets_schema | ( | ) |
Implements hook_featureset_meets_schema() Purpose: To describe the structure of featureset_meets to tripal
Definition at line 2014 of file tripal_core.schema.api.inc.
| tripal_core_chado_fnr_type_schema | ( | ) |
Implements hook_fnr_type_schema() Purpose: To describe the structure of fnr_type to tripal
Definition at line 2058 of file tripal_core.schema.api.inc.
| tripal_core_chado_fp_key_schema | ( | ) |
Implements hook_fp_key_schema() Purpose: To describe the structure of fp_key to tripal
Definition at line 2584 of file tripal_core.schema.api.inc.
| tripal_core_chado_genotype_schema | ( | ) |
Implements hook_genotype_schema() Purpose: To describe the structure of genotype to tripal
Definition at line 2634 of file tripal_core.schema.api.inc.
| tripal_core_chado_gff3atts_schema | ( | ) |
Implements hook_gff3atts_schema() Purpose: To describe the structure of gff3atts to tripal
Definition at line 3114 of file tripal_core.schema.api.inc.
| tripal_core_chado_gff3view_schema | ( | ) |
Implements hook_gff3view_schema() Purpose: To describe the structure of gff3view to tripal
Definition at line 3163 of file tripal_core.schema.api.inc.
| tripal_core_chado_gffatts_schema | ( | ) |
Implements hook_gffatts_schema() Purpose: To describe the structure of gffatts to tripal
Definition at line 3263 of file tripal_core.schema.api.inc.
| tripal_core_chado_intron_combined_view_schema | ( | ) |
Implements hook_intron_combined_view_schema() Purpose: To describe the structure of intron_combined_view to tripal
Definition at line 3312 of file tripal_core.schema.api.inc.
| tripal_core_chado_intronloc_view_schema | ( | ) |
Implements hook_intronloc_view_schema() Purpose: To describe the structure of intronloc_view to tripal
Definition at line 3049 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_cvterm_schema | ( | ) |
Implements hook_library_cvterm_schema() Purpose: To describe the structure of library_cvterm to tripal
Definition at line 2699 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_dbxref_schema | ( | ) |
Implements hook_library_dbxref_schema() Purpose: To describe the structure of library_dbxref to tripal
Definition at line 2768 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_feature_count_schema | ( | ) |
Implements hook_library_feature_count_schema() Purpose: To describe the structure of library_feature_count to tripal
Definition at line 2894 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_feature_schema | ( | ) |
Implements hook_library_feature_schema() Purpose: To describe the structure of library_feature to tripal
Definition at line 2834 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_pub_schema | ( | ) |
Implements hook_library_pub_schema() Purpose: To describe the structure of library_pub to tripal
Definition at line 1728 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_schema | ( | ) |
Implements hook_library_schema() Purpose: To describe the structure of library to tripal
Definition at line 2953 of file tripal_core.schema.api.inc.
| tripal_core_chado_library_synonym_schema | ( | ) |
Implements hook_library_synonym_schema() Purpose: To describe the structure of library_synonym to tripal
Definition at line 1647 of file tripal_core.schema.api.inc.
| tripal_core_chado_libraryprop_pub_schema | ( | ) |
Implements hook_libraryprop_pub_schema() Purpose: To describe the structure of libraryprop_pub to tripal
Definition at line 604 of file tripal_core.schema.api.inc.
| tripal_core_chado_libraryprop_schema | ( | ) |
Implements hook_libraryprop_schema() Purpose: To describe the structure of libraryprop to tripal
Definition at line 532 of file tripal_core.schema.api.inc.
| tripal_core_chado_magedocumentation_schema | ( | ) |
Implements hook_magedocumentation_schema() Purpose: To describe the structure of magedocumentation to tripal
Definition at line 664 of file tripal_core.schema.api.inc.
| tripal_core_chado_mageml_schema | ( | ) |
Implements hook_mageml_schema() Purpose: To describe the structure of mageml to tripal
Definition at line 733 of file tripal_core.schema.api.inc.
| tripal_core_chado_materialized_view_schema | ( | ) |
Implements hook_materialized_view_schema() Purpose: To describe the structure of materialized_view to tripal
Definition at line 442 of file tripal_core.schema.api.inc.
| tripal_core_chado_organism_dbxref_schema | ( | ) |
Implements hook_organism_dbxref_schema() Purpose: To describe the structure of organism_dbxref to tripal
Definition at line 75 of file tripal_core.schema.api.inc.
| tripal_core_chado_organism_schema | ( | ) |
Implements hook_organism_schema() Purpose: To describe the structure of organism to tripal
Definition at line 369 of file tripal_core.schema.api.inc.
| tripal_core_chado_organismprop_schema | ( | ) |
Implements hook_organismprop_schema() Purpose: To describe the structure of organismprop to tripal
Definition at line 135 of file tripal_core.schema.api.inc.
| tripal_core_chado_phendesc_schema | ( | ) |
Implements hook_phendesc_schema() Purpose: To describe the structure of phendesc to tripal
Definition at line 207 of file tripal_core.schema.api.inc.
| tripal_core_chado_phenotype_comparison_cvterm_schema | ( | ) |
Implements hook_phenotype_comparison_cvterm_schema() Purpose: To describe the structure of phenotype_comparison_cvterm to tripal
Definition at line 880 of file tripal_core.schema.api.inc.
| tripal_core_chado_phenotype_comparison_schema | ( | ) |
Implements hook_phenotype_comparison_schema() Purpose: To describe the structure of phenotype_comparison to tripal
Definition at line 783 of file tripal_core.schema.api.inc.
| tripal_core_chado_phenotype_cvterm_schema | ( | ) |
Implements hook_phenotype_cvterm_schema() Purpose: To describe the structure of phenotype_cvterm to tripal
Definition at line 1352 of file tripal_core.schema.api.inc.
| tripal_core_chado_phenotype_schema | ( | ) |
Implements hook_phenotype_schema() Purpose: To describe the structure of phenotype to tripal
Definition at line 287 of file tripal_core.schema.api.inc.
| tripal_core_chado_phenstatement_schema | ( | ) |
Implements hook_phenstatement_schema() Purpose: To describe the structure of phenstatement to tripal
Definition at line 1419 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylonode_dbxref_schema | ( | ) |
Implements hook_phylonode_dbxref_schema() Purpose: To describe the structure of phylonode_dbxref to tripal
Definition at line 1587 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylonode_organism_schema | ( | ) |
Implements hook_phylonode_organism_schema() Purpose: To describe the structure of phylonode_organism to tripal
Definition at line 1293 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylonode_pub_schema | ( | ) |
Implements hook_phylonode_pub_schema() Purpose: To describe the structure of phylonode_pub to tripal
Definition at line 1233 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylonode_relationship_schema | ( | ) |
Implements hook_phylonode_relationship_schema() Purpose: To describe the structure of phylonode_relationship to tripal
Definition at line 951 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylonode_schema | ( | ) |
Implements hook_phylonode_schema() Purpose: To describe the structure of phylonode to tripal
Definition at line 1497 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylonodeprop_schema | ( | ) |
Implements hook_phylonodeprop_schema() Purpose: To describe the structure of phylonodeprop to tripal
Definition at line 1030 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylotree_pub_schema | ( | ) |
Implements hook_phylotree_pub_schema() Purpose: To describe the structure of phylotree_pub to tripal
Definition at line 1173 of file tripal_core.schema.api.inc.
| tripal_core_chado_phylotree_schema | ( | ) |
Implements hook_phylotree_schema() Purpose: To describe the structure of phylotree to tripal
Definition at line 1104 of file tripal_core.schema.api.inc.
| tripal_core_chado_project_schema | ( | ) |
Implements hook_project_schema() Purpose: To describe the structure of project to tripal
Definition at line 3387 of file tripal_core.schema.api.inc.
| tripal_core_chado_protein_coding_gene_schema | ( | ) |
Implements hook_protein_coding_gene_schema() Purpose: To describe the structure of protein_coding_gene to tripal
Definition at line 3442 of file tripal_core.schema.api.inc.
| tripal_core_chado_protocol_schema | ( | ) |
Implements hook_protocol_schema() Purpose: To describe the structure of protocol to tripal
Definition at line 5138 of file tripal_core.schema.api.inc.
| tripal_core_chado_protocolparam_schema | ( | ) |
Implements hook_protocolparam_schema() Purpose: To describe the structure of protocolparam to tripal
Definition at line 5230 of file tripal_core.schema.api.inc.
| tripal_core_chado_pub_dbxref_schema | ( | ) |
Implements hook_pub_dbxref_schema() Purpose: To describe the structure of pub_dbxref to tripal
Definition at line 5430 of file tripal_core.schema.api.inc.
| tripal_core_chado_pub_relationship_schema | ( | ) |
Implements hook_pub_relationship_schema() Purpose: To describe the structure of pub_relationship to tripal
Definition at line 5069 of file tripal_core.schema.api.inc.
| tripal_core_chado_pub_schema | ( | ) |
Implements hook_pub_schema() Purpose: To describe the structure of pub to tripal
Definition at line 5310 of file tripal_core.schema.api.inc.
| tripal_core_chado_pubauthor_schema | ( | ) |
Implements hook_pubauthor_schema() Purpose: To describe the structure of pubauthor to tripal
Definition at line 4988 of file tripal_core.schema.api.inc.
| tripal_core_chado_public_feature_schema | ( | ) |
Implements hook_public_feature_schema() Purpose: To describe the structure of public_feature to tripal
Definition at line 4717 of file tripal_core.schema.api.inc.
| tripal_core_chado_public_library_schema | ( | ) |
Implements hook_public_library_schema() Purpose: To describe the structure of public_library to tripal
Definition at line 4787 of file tripal_core.schema.api.inc.
| tripal_core_chado_public_organism_schema | ( | ) |
Implements hook_public_organism_schema() Purpose: To describe the structure of public_organism to tripal
Definition at line 4852 of file tripal_core.schema.api.inc.
| tripal_core_chado_pubprop_schema | ( | ) |
Implements hook_pubprop_schema() Purpose: To describe the structure of pubprop to tripal
Definition at line 4917 of file tripal_core.schema.api.inc.
| tripal_core_chado_quantification_relationship_schema | ( | ) |
Implements hook_quantification_relationship_schema() Purpose: To describe the structure of quantification_relationship to tripal
Definition at line 5588 of file tripal_core.schema.api.inc.
| tripal_core_chado_quantification_schema | ( | ) |
Implements hook_quantification_schema() Purpose: To describe the structure of quantification to tripal
Definition at line 5496 of file tripal_core.schema.api.inc.
| tripal_core_chado_quantificationprop_schema | ( | ) |
Implements hook_quantificationprop_schema() Purpose: To describe the structure of quantificationprop to tripal
Definition at line 6061 of file tripal_core.schema.api.inc.
| tripal_core_chado_stats_paths_to_root_schema | ( | ) |
Implements hook_stats_paths_to_root_schema() Purpose: To describe the structure of stats_paths_to_root to tripal
Definition at line 6133 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_cvterm_schema | ( | ) |
Implements hook_stock_cvterm_schema() Purpose: To describe the structure of stock_cvterm to tripal
Definition at line 6292 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_dbxref_schema | ( | ) |
Implements hook_stock_dbxref_schema() Purpose: To describe the structure of stock_dbxref to tripal
Definition at line 5995 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_genotype_schema | ( | ) |
Implements hook_stock_genotype_schema() Purpose: To describe the structure of stock_genotype to tripal
Definition at line 5935 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_pub_schema | ( | ) |
Implements hook_stock_pub_schema() Purpose: To describe the structure of stock_pub to tripal
Definition at line 5657 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_relationship_pub_schema | ( | ) |
Implements hook_stock_relationship_pub_schema() Purpose: To describe the structure of stock_relationship_pub to tripal
Definition at line 5798 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_relationship_schema | ( | ) |
Implements hook_stock_relationship_schema() Purpose: To describe the structure of stock_relationship to tripal
Definition at line 5717 of file tripal_core.schema.api.inc.
| tripal_core_chado_stock_schema | ( | ) |
Implements hook_stock_schema() Purpose: To describe the structure of stock to tripal
Definition at line 6195 of file tripal_core.schema.api.inc.
| tripal_core_chado_stockcollection_schema | ( | ) |
Implements hook_stockcollection_schema() Purpose: To describe the structure of stockcollection to tripal
Definition at line 5858 of file tripal_core.schema.api.inc.
| tripal_core_chado_stockcollection_stock_schema | ( | ) |
Implements hook_stockcollection_stock_schema() Purpose: To describe the structure of stockcollection_stock to tripal
Definition at line 4657 of file tripal_core.schema.api.inc.
| tripal_core_chado_stockcollectionprop_schema | ( | ) |
Implements hook_stockcollectionprop_schema() Purpose: To describe the structure of stockcollectionprop to tripal
Definition at line 4585 of file tripal_core.schema.api.inc.
| tripal_core_chado_stockprop_pub_schema | ( | ) |
Implements hook_stockprop_pub_schema() Purpose: To describe the structure of stockprop_pub to tripal
Definition at line 4079 of file tripal_core.schema.api.inc.
| tripal_core_chado_stockprop_schema | ( | ) |
Implements hook_stockprop_schema() Purpose: To describe the structure of stockprop to tripal
Definition at line 4007 of file tripal_core.schema.api.inc.
| tripal_core_chado_study_assay_schema | ( | ) |
Implements hook_study_assay_schema() Purpose: To describe the structure of study_assay to tripal
Definition at line 4216 of file tripal_core.schema.api.inc.
| tripal_core_chado_study_schema | ( | ) |
Implements hook_study_schema() Purpose: To describe the structure of study to tripal
Definition at line 4139 of file tripal_core.schema.api.inc.
| tripal_core_chado_studydesign_schema | ( | ) |
Implements hook_studydesign_schema() Purpose: To describe the structure of studydesign to tripal
Definition at line 3954 of file tripal_core.schema.api.inc.
| tripal_core_chado_studydesignprop_schema | ( | ) |
Implements hook_studydesignprop_schema() Purpose: To describe the structure of studydesignprop to tripal
Definition at line 3882 of file tripal_core.schema.api.inc.
| tripal_core_chado_studyfactor_schema | ( | ) |
Implements hook_studyfactor_schema() Purpose: To describe the structure of studyfactor to tripal
Definition at line 3615 of file tripal_core.schema.api.inc.
| tripal_core_chado_studyfactorvalue_schema | ( | ) |
Implements hook_studyfactorvalue_schema() Purpose: To describe the structure of studyfactorvalue to tripal
Definition at line 3543 of file tripal_core.schema.api.inc.
| tripal_core_chado_studyprop_feature_schema | ( | ) |
Implements hook_studyprop_feature_schema() Purpose: To describe the structure of studyprop_feature to tripal
Definition at line 3753 of file tripal_core.schema.api.inc.
| tripal_core_chado_studyprop_schema | ( | ) |
Implements hook_studyprop_schema() Purpose: To describe the structure of studyprop to tripal
Definition at line 3681 of file tripal_core.schema.api.inc.
| tripal_core_chado_synonym_schema | ( | ) |
Implements hook_synonym_schema() Purpose: To describe the structure of synonym to tripal
Definition at line 3818 of file tripal_core.schema.api.inc.
| tripal_core_chado_tableinfo_schema | ( | ) |
Implements hook_tableinfo_schema() Purpose: To describe the structure of tableinfo to tripal
Definition at line 4276 of file tripal_core.schema.api.inc.
| tripal_core_chado_treatment_schema | ( | ) |
Implements hook_treatment_schema() Purpose: To describe the structure of treatment to tripal
Definition at line 4359 of file tripal_core.schema.api.inc.
| tripal_core_chado_tripal_obo_schema | ( | ) |
Implements hook_tripal_obo_schema() Purpose: To describe the structure of tripal_obo to tripal
Definition at line 4434 of file tripal_core.schema.api.inc.
| tripal_core_chado_tripal_organism_views_common_name_schema | ( | ) |
Implements hook_tripal_organism_views_common_name_schema() Purpose: To describe the structure of tripal_organism_views_common_name to tripal
Definition at line 4491 of file tripal_core.schema.api.inc.
| tripal_core_chado_type_feature_count_schema | ( | ) |
Implements hook_type_feature_count_schema() Purpose: To describe the structure of type_feature_count to tripal
Definition at line 4539 of file tripal_core.schema.api.inc.
| tripal_core_get_chado_tables | ( | ) |
Definition at line 43 of file tripal_core.schema.api.inc.
References tripal_db_set_active().
| tripal_cv_chado_cvterm_schema | ( | ) |
Implements hook_chado_cvterm_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 327 of file tripal_cv.api.inc.
| tripal_db_chado_dbxref_schema | ( | ) |
Implements hook_chado_dbxref_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 281 of file tripal_db.api.inc.
| tripal_feature_chado_feature_cvterm_schema | ( | ) |
Implements hook_chado_feature_relationship_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 201 of file tripal_feature.api.inc.
| tripal_feature_chado_feature_dbxref_schema | ( | ) |
Implements hook_chado_feature_dbxref_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 140 of file tripal_feature.api.inc.
| tripal_feature_chado_feature_relationship_schema | ( | ) |
Implements hook_chado_feature_relationship_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 171 of file tripal_feature.api.inc.
| tripal_feature_chado_feature_schema | ( | ) |
Implements hook_chado_feature_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 13 of file tripal_feature.api.inc.
| tripal_feature_chado_feature_synonym_schema | ( | ) |
Definition at line 230 of file tripal_feature.api.inc.
| tripal_feature_chado_featureloc_schema | ( | ) |
Implements hook_chado_featureloc_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 109 of file tripal_feature.api.inc.
| tripal_feature_chado_featureprop_schema | ( | ) |
Implements hook_chado_featureprop_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 72 of file tripal_feature.api.inc.
| tripal_genetic_chado_feature_genotype_schema | ( | ) |
Implements hook_chado_genotype_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 61 of file tripal_genetic.api.inc.
| tripal_genetic_chado_genotype_schema | ( | ) |
Implements hook_chado_genotype_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 35 of file tripal_genetic.api.inc.
| tripal_library_chado_library_feature_schema | ( | ) |
Implements hook_chado_library_feature_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 60 of file tripal_library.api.inc.
| tripal_library_chado_library_schema | ( | ) |
Implements hook_chado_library_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 19 of file tripal_library.api.inc.
| tripal_library_chado_libraryprop_schema | ( | ) |
Implements hook_chado_libraryprop_schema() Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 91 of file tripal_library.api.inc.
| tripal_organism_chado_organism_schema | ( | ) |
Implements hook_chado_organism_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 80 of file tripal_organism.api.inc.
| tripal_organism_chado_organismprop_schema | ( | ) |
Implements hook_chado_organismprop_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 109 of file tripal_organism.api.inc.
| tripal_stock_chado_stock_cvterm_schema | ( | ) |
Implements hook_chado_stock_cvterm_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 434 of file tripal_stock.api.inc.
| tripal_stock_chado_stock_dbxref_schema | ( | ) |
Implements hook_chado_stock_dbxref_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 472 of file tripal_stock.api.inc.
| tripal_stock_chado_stock_genotype_schema | ( | ) |
Implements hook_chado_stock_genotype_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 503 of file tripal_stock.api.inc.
| tripal_stock_chado_stock_pub_schema | ( | ) |
Implements hook_chado_stock_pub_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 534 of file tripal_stock.api.inc.
| tripal_stock_chado_stock_relationship_pub_schema | ( | ) |
Implements hook_chado_stock_relationship_pub_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 597 of file tripal_stock.api.inc.
| tripal_stock_chado_stock_relationship_schema | ( | ) |
Implements hook_chado_stock_relationship_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 565 of file tripal_stock.api.inc.
| tripal_stock_chado_stock_schema | ( | ) |
Implements hook_chado_stock_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 321 of file tripal_stock.api.inc.
| tripal_stock_chado_stockcollection_schema | ( | ) |
Implements hook_chado_stockcollection_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 628 of file tripal_stock.api.inc.
| tripal_stock_chado_stockcollection_stock_schema | ( | ) |
Implements hook_chado_stockcollection_stock_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 659 of file tripal_stock.api.inc.
| tripal_stock_chado_stockcollectionprop_schema | ( | ) |
Implements hook_chado_stockcollectionprop_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 690 of file tripal_stock.api.inc.
| tripal_stock_chado_stockprop_pub_schema | ( | ) |
Implements hook_chado_stockprop_pub_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 403 of file tripal_stock.api.inc.
| tripal_stock_chado_stockprop_schema | ( | ) |
Implements hook_chado_stockprop_schema()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 372 of file tripal_stock.api.inc.
1.7.4 
